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setaria italica genome

Foxtail millet, scientific name Setaria italica (synonym Panicum italicum L.), is an annual grass grown for human food.It is the second-most widely planted species of millet, and the most grown millet species in Asia.The oldest evidence of foxtail millet cultivation was found along the ancient course of the Yellow River in Cishan, China, carbon dated to be from 8700 BC. Assembly. Genome duplication events , , phylogenetic and comparative genomic analysis , enzymatic properties , and biochemical characterization , have been studied in this gene family. Sanger sequencing was performed on whole-genome shotgun clone libraries having different insert sizes. Tsai KJ, Lu MYJ, Yang KJ, Li MY, Teng YC, Chen S, Ku MSB, Li WH. The nuclear genome (~490 Mb) is diploid with nine chromosomes (2n=18). Foxtail millet (Setaria italica L.) is the oldest domesticated crop in the world (domesticated >8700 years ago) and it has been extensively grown in the semi-arid regions of Asia, Europe and the Americas as a food and fodder crop ever since. 2016;6:35076. Keywords: zinc and iron regulated transporters, signal peptide, Setaria italica, expression profiling, gene characterization. • Potential candidate genes were identified for further functional characterization. • Expression profiling was performed in response to stress and hormone treatments. Foxtail millet (Setaria italica L.) is a member of the Poaceae grass family and is an ancient crop in China. The Millet Genome Database is based on the data of the millet genome project researched by BGI and Zhangjiakou Academy of Agricultural sciences. The database records the genotype-phenotype information of millet. Foxtail millet is an important food and fodder crop in arid regions because of its characteristics such as resist-ance to drought and nutrition deficiency stress. Assembling the Setaria italica L. Beauv. The approximately 400-Mb assembly covers approximately 80% of the genome and >95% of the gene space. Foxtail millet (Setaria italica) was an important foodstuff in China in … Users can query and retrieve the genotype of millet through the phenotype, and the corresponding phenotype can be retrieved by genotype. Sci Rep-Uk. Yugu1 was sequenced and assembled by the Joint Genome Institute (JGI) in collaboration with community researchers. Citation: Alagarasan G, Dubey M, Aswathy KS and Chandel G (2017) Genome Wide Identification of Orthologous ZIP Genes Associated with Zinc and Iron Translocation in Setaria italica… • Segmental and tandem duplications resulted in expansion of these genes. Eighty three C 4 pathway-specific genes identified in Setaria italica and Setaria viridis. We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). Pub-lished plant genome sequences have facilitated research Setaria italica (foxtail millet): 101779009: Help: Entry: 101779009 CDS T02818 : Definition (RefSeq) uncharacterized protein LOC101779009. Foxtail millet ( Setaria italica) is a diploid grass with a relatively small genome (~515 Mb).It is an important grain crop in temperate, subtropical, and tropical Asia and in parts of southern Europe, and is grown for forage in North America, South America, Australia, and North Africa. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. Setaria italica cv. Identification of Setaria italica CYP99A17 as a diterpene monohydroxylase. genome into nine chromosomes and insights into regions affecting growth and drought tolerance. 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